Enzyme cost minimization

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Data and model files

Model building for ECM relies on general biochemical information (pathway structures, thermodynamic and kinetic parameters, and omics data) given in table files. These files can be obtained from github .

MATLAB Code

MATLAB code and data for Enzyme Cost Minimization can be downloaded from github. Documentation can be found here. For a usage example, see the Workflow page.

Python Code

Python code for enzyme cost minimization can be downloaded from gitlab. For a usage example, see the Workflow page or the jupyter notebook haverkorn.ipynb in the gitlab repository.

Online simulators

Enzyme cost minimization can be run online at the eQuilibrator website or using the NEOS optimization server.