Struktur biologischer Netzwerke

1. Watts and Strogatz (1998), Collective dynamics of 'small-world' networks, Nature 393, 440 [pdf]
2. Ravasz E. et al (2002), Hierarchical organization of modularity in metabolic networks, Science 297, 1551 [pdf]
3. Barabasi A. and Oltvai Z.N. (2004), Network biology: understanding the cell's functional organization, Nature Reviews 5, 101 [pdf]
4. Barabasi A. and Bonabeau E. (2004), Skalenfreie Netze, Spektrum der Wissenschaft [pdf]
5. Milo R. et al. (2002), Network motifs: simple building blocks of complex networks, Science 298, 824 [pdf]

Sequenzevolution

1. Competition and Selection in Biological Systems: aus dem Fachkurs 'Modellierung biologischer Systeme', HU 2000. [pdf]
2. Eigen & Schuster (1977) The Hypercycle. A Principle of Natural Self-Organisation. Part A: Emergence of the Hypercycle. Naturwissenschaften 64:541-565. <pdf>

1. Eigen & Schuster (1978) The Hypercycle. A Principle of Natural Self-Organisation. Part B: The Abstract Hypercycle. Naturwissenschaften 65:7-41. <pdf>
2. Eigen & Schuster (1978) The Hypercycle. A Principle of Natural Self-Organisation. Part C: The Realistic Hypercycle. Naturwissenschaften 65:341-369 <pdf>
3. Swetina & Schuster (1982) Self-replication with errors. A model for polynucleotide replication. Biophys. Chem. 16:329-345. <pdf>

Spieltheorie

1. Buch "Major transitions in evolution", von J. Maynard Smith
2. Nowak M.A. (2006), Five rules for the evolution of cooperation, Science 314, 1560 [pdf]
3. Pfeiffer T. et al (2001), Cooperation and competition in the evolution of ATP-producing pathways, Science 292, 504 [pdf]
4. Turner P.E. (2005), Cheating viruses and game theory, American scientist 93, 428, [pdf]
5. Velicer G.J. (2003), Social strife in the microbial world, Trends in microbiology 11, 330 [pdf]
6. Weitere links:
   plato.stanford.edu/entries/game-evolutionary/
   www.holycross.edu/departments/biology/kprestwi/behavior/ESS/ESS_index_frmset.html
   www.bio.davidson.edu/people/vecase/Behavior/Spring2002/perry/altruism.html
   

Molekulare Evolution

1. Molecular Evolution by Li (1997). Chapter 2: Dynamics of genes in populations. [pdf]
2. A review on the 'Nearly Neutral Theory of Evolution': Otha (1992) The nearly neutral theory of molecular evolution. Annu. Rev. Ecol. Syst. 23:263-86 <pdf>

1. Kimura (1954) Process leading to quasi-fixation of genes in natural populations due to random fluctuation of selection intensities. Genetics 39:280-295. <pdf>
2. Kimura (1962) On the probability of fixation of mutant genes in a populations. Genetics 47:713-719. <pdf>
3. Kimura et al. (1963) The mutation lead in small populations. Genetics 48:1303-1312. <pdf>
4. Kimura & Crow (1964) The number of alleles that can be maintained in a fiite population. Genetics 49:725-738. <pdf>
5. Kimura & Maruyama (1966) The mutational load with epistatic gene interactions in fitness. Genetics 54:1337-1351. <pdf>
6. Kimura (1969) The number of heterozygous nucleotide sites mainted in a finite population due to steady state flx of mutations. Genetics 61:893-903. <pdf>
7. Kimura & Ohta (1970) Probability of fixation of a mutant gene in a finite population when selective advantage decreases with time. Genetics 65:525-534. <pdf>

Populationsdynamik

1. Mathematical Biology by Murray (2001) I: An introduction. Chapter 2: Discrete populations models for a single species. <pdf>
2. Mathematical Biology by Murray (2001) I: An introduction. Chapter 3: Models for interacting populations. [pdf]
3. Peterman (1977) A simple mechanism that causes collabsing stability regions in exploited salmoid populations. J. Fish. Res. Bd. Can. 34:1130-1142. <pdf>

1. Wright (1983) Catastrophe Theory in Management Forecasting and Decision Making. J. Opl Res. Soc. 34:935-942 <pdf>

Signalverarbeitung im Nervensystem

1. Der Klassiker: Hodgkin and Huxley (1952) [pdf]
2. Skript "Neuronale Dynamik" aus dem Fachkurs "Modellierung biologischer Systeme", Humboldt-Uni Berlin [ps]
3. van Hemmen J.L. (2001), Theory of synaptic plasticity, Handbook of Biological Physics (Vol.4), 771 [pdf]
4. Hopfield J. (1982), [pdf]
5. Herz. A. et al, Auditory processing of acoustic communication signals: sensory biophysics, neural coding, and discrimination of conspecific songs [pdf]
6. Farrow K., Borst A., Haag J (2005), Sharing receptive fields with your Neighbors: tuning the vertical system cells to wide field motion. [pdf]

Self-organising maps

1. Willshaw D., Self-organisation in the nervous system. [pdf]
2. Referenzen in Wikipedia-Eintrag Selbstorganisierende_Karte
3. Neural Nets by Kevin Gurney
4. "Selbstorganisierende neuronale Karten", Artikel aus Spektrum der Wissenschaft
5. Obermayer K., Statistical-mechanical analysis of self-organization and pattern formation during the development of visual maps [pdf]

Evolutionäre Algorithmen

1. Ein paar gute Webseiten:
   A Survey of Global Optimization Methods
   Global Optimization

1. Noch ein klassicher SA-Artikel: Kirkpatrick et al. (1983) Science 220. [pdf]
2. An introduction to Optimization. The first chapter of the book 'Differential Evolution by Price et al. [pdf]

1. Der klassische SA-Artikel: Metropolis et al. (1953) J. Chem. Phys. 21. [pdf]
2. Storn et al. (1997) Differential evolution paper. [pdf]

Allometrie und Bionik

1. West G.B et al. (1997), A general model for the origin of allometric scaling laws in biology, Science [pdf]

Musterbildung

1. H. Meinhardts Gruppe am MPI für Entwicklungsbiologie
2. Ein interessantes Buch: Meinhardt H. (1982) Models of biological pattern formation. Academic Press. 211p. [pdf]

1. Der klassische Artikel (Turing-Muster): Turing, A.M. (1952) The Chemical Basis of Morphogenesis. Phil. Trans. R. Soc. B 237,641:37-72. [pdf]
2. Dasselbe nochmal etwas einfacher dargestellt: aus dem Fachkurs 'Modellierung biologischer Systeme', HU 2000. [pdf]
3. Pearson J.E. (1993) Complex Patterns in a Simple System. Science 261:189-192. [pdf]

1. Gierer A., Meinhardt H. (1972) A Theory of Biological Pattern Formation. Kybernetik 12:30-39. [pdf]
2. Gierer A. Meinhardt H.: A generative principle of pattern formation based on lateral inhibition, local instability and global stability. [pdf]
3. Lee K.J. et al. (1992) Pattern Formation by Interacting Chemical Fronts. Science 261:192-194 [pdf]